Community-class

communities<-,Community,matrix-method

communities,Community-method

samples<-,Community,data.frame-method

samples<-,Community,DataFrame-method

samples,Community-method

show,Community-method

xtabs,Community-method

Representation of microbial communities and sample metadata.

classes

This package defines a class for representing microbial
    communities, and offers facilities for common community analysis
    tasks related to the microbiome.

Martin Morgan

bvbiome

Microbial Community Representation and Community Analysis

Community-class function

Objects can be created by calls of the form <code><a href="/link/Community?package=bvbiome&version=0.99.18" rd-options="" data-mini-rdoc="bvbiome::Community">Community</a></code>.

Objects from the Class

Class <code>"<links4class>DataFrame</links4class>"</code>, directly.
Class <code>"<links4class>DataTable</links4class>"</code>, by class "DataFrame", distance 2.
Class <code>"<links4class>SimpleList</links4class>"</code>, by class "DataFrame", distance 2.
Class <code>"<links4class>DataTableORNULL</links4class>"</code>, by class "DataFrame", distance 3.
Class <code>"<links4class>List</links4class>"</code>, by class "DataFrame", distance 3.
Class <code>"<links4class>Vector</links4class>"</code>, by class "DataFrame", distance 4.
Class <code>"<links4class>Annotated</links4class>"</code>, by class "DataFrame", distance 5.

Extends

Class <code>"Community"</code>

Community-class: Class `"Community"`

Description

Arguments

Objects from the Class

Extends

See Also

Examples