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c3net (version 1.1.0)
Infering large-scale gene networks with C3NET
Description
This package allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.
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Version
Version
1.1.1.1
1.1.1
1.1.0
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Install
install.packages('c3net')
Monthly Downloads
354
Version
1.1.0
License
GPL (>= 3)
Maintainer
Gokmen Altay
Last Published
January 27th, 2011
Functions in c3net (1.1.0)
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sigtestp
Significance test for elimination of nonsignificant edges
truenet
Reference, e.g. true, network of the example data set
sigtestMTC
Elimination of nonsignificant edges by application of a procedure for multiple testing correction
checknet
Validating the inferred network
makemim
Constructing mutual information matrix
c3net
All in one function to infer network with C3NET
netplot
Plotting the inferred network
copula
Copula transformation of data set
expdata
Example data set
c3
C3NET second step: Selecting maximum valued elements