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c3net (version 1.1.0)

Infering large-scale gene networks with C3NET

Description

This package allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.

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Version

Install

install.packages('c3net')

Monthly Downloads

511

Version

1.1.0

License

GPL (>= 3)

Maintainer

Gokmen Altay

Last Published

January 27th, 2011

Functions in c3net (1.1.0)

sigtestp

Significance test for elimination of nonsignificant edges
truenet

Reference, e.g. true, network of the example data set
sigtestMTC

Elimination of nonsignificant edges by application of a procedure for multiple testing correction
checknet

Validating the inferred network
makemim

Constructing mutual information matrix
c3net

All in one function to infer network with C3NET
netplot

Plotting the inferred network
copula

Copula transformation of data set
expdata

Example data set
c3

C3NET second step: Selecting maximum valued elements