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c3net (version 1.1.1)
Infering large-scale gene networks with C3NET
Description
This package allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.
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Version
Version
1.1.1.1
1.1.1
1.1.0
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Install
install.packages('c3net')
Monthly Downloads
495
Version
1.1.1
License
GPL (>= 3)
Maintainer
Gokmen Altay
Last Published
July 23rd, 2012
Functions in c3net (1.1.1)
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expdata
Example data set
checknet
Validating the inferred network
c3
C3NET second step: Selecting maximum valued elements
makemim
Constructing mutual information matrix
netplot
Plotting the inferred network
sigtestp
Significance test for elimination of nonsignificant edges
sigtestMTC
Elimination of nonsignificant edges by application of a procedure for multiple testing correction
truenet
Reference, e.g. true, network of the example data set
copula
Copula transformation of data set
c3net
All in one function to infer network with C3NET