stat_collect

A connection such as this returned by 
<code><a rd-options="DBI" href="/link/dbConnect?package=cRegulome&version=0.3.2&to=DBI" data-mini-rdoc="DBI::dbConnect">dbConnect</a></code>

conn

A <code>character</code> vector of The Cancer Genome Atlas (TCGA)
study identifiers. To view the available studies in TCGA project,
<a href="https://tcga-data.nci.nih.gov/docs/publications/tcga">https://tcga-data.nci.nih.gov/docs/publications/tcga</a>. When left to
default <code>NULL</code> all available studies will be included.

study

A string such as this returned by <code><a rd-options="" href="/link/stat_make?package=cRegulome&version=0.3.2" data-mini-rdoc="cRegulome::stat_make">stat_make</a></code>

stat

A <code>character</code> string. Either 'mir' of 'tf'. Used to define
columns and tables names.

type

Not meant to be called directly by the user.

Builds a 'SQLite' database file of pre-calculated transcription
factor/microRNA-gene correlations (co-expression) in cancer from the
Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and
'miRCancerdb' databases (in press). Provides custom classes and functions
to query, tidy and plot the correlation data.

Mahmoud Ahmed

cRegulome

Obtain and Visualize Regulome-Gene Expression Correlations in
Cancer

stat_collect function

A connection such as this returned by 
<code><a rd-options='DBI' href='dbConnect'>dbConnect</a></code>

A <code>character</code> vector of The Cancer Genome Atlas (TCGA)
study identifiers. To view the available studies in TCGA project,
<a href='https://tcga-data.nci.nih.gov/docs/publications/tcga'>https://tcga-data.nci.nih.gov/docs/publications/tcga</a>. When left to
default <code>NULL</code> all available studies will be included.

A string such as this returned by <code><a rd-options='' href='stat_make'>stat_make</a></code>

stat_collect: Collect data from SQLite database

Description

Usage

Arguments

Value