caOmicsV (version 1.2.0)

getBioNetPlotLocations: Get bioNetCircos Plot Locations

Description

Get plot locations for a node on caOmicsC bioNetCircos layout

Usage

getBioNetPlotLocations(nodeCenter, outer, inner)

Arguments

nodeCenter

numeric, x and y coordinates of the node center

outer

non-negative numeric, outer limit of plot track relative to node center

inner

non-negative numeric, inner limit of plot track relative to ode center

Value

nodeCenter

numeric, x and y coordinates of the node center

outPositions

two dimensional numeric matrix for x and y coordinates of outer boundary for plot

inPositions

two dimensional numeric matrix for x and y coordinates of inner boundary for plot

positionIndex

matrix with index of x and y coordinates of base plot position for each sample

Examples

    data(bionetPlotDemoData)
    expr <- bionetPlotDemoData$heatmapData[[1]]
    bioNet <- bc3net(expr)

    initializeBioNetCircos(bioNet)

    bioNetGraph <- getBioNetGraph()
    outer <- 1.5
    inner <- 1.0

    nodeCenter <- as.numeric(bioNetGraph$layout[1,])
    plotLocations <- getBioNetPlotLocations(nodeCenter, outer, inner)