caOmicsV (version 1.2.0)

getPlotOmicsData: Extract Subset from A Data Frame

Description

Extract a subset from the input data for a set of samples and genes

Usage

getPlotOmicsData(omicsData, sampleNames, geneNames)

Arguments

omicsData

a data frame with all samples and all genes

sampleNames

character vector, names of samples to be extracted from dataset.

geneNames

character vector, names of genes to be extracted from dataset.

Value

A data frame with subset of input data

Examples

    data(RNASeq)
    data(RNASeqDemoData)
    geneNames  <- as.character(RNASeqDemoData[,1])
    sampleNames <- colnames(RNASeqDemoData)[-1]
    plotData <- getPlotOmicsData(RNASeq, sampleNames, geneNames)