caOmicsV (version 1.2.0)

plotBioMatrix: Default Plot Method for caOmicsV bioMatrix Layout Plot

Description

A sample way to plot sample information and genomic data with default settings.

Usage

plotBioMatrix(dataSet, summaryType=c("text", "bar"), summarybyRow=TRUE,  heatmapMax=NULL, heatmapMin=NULL, heatmapColor="BlueWhiteRed")

Arguments

dataSet

an object, returned from method of getPlotDataSet(), with all plot data

summaryType

character vector, either "text" or "bar", for plot type of summary data

summarybyRow

logic, if the summary data is for each row or for each column

heatmapMax

numeric, maximum value for heatmap plot, set to NULL to use the maximum value in input data.

heatmapMin

numeric, minimum value for heatmap plot, set to NULL to use the minimum value in input data.

heatmapColor

character vector,one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed" , or "YellowToRed"

Value

None

Examples

    data(biomatrixPlotDemoData)
    plotBioMatrix(biomatrixPlotDemoData, summaryType="text", 
        summarybyRow=TRUE, heatmapMax=3, heatmapMin=-3, 
        heatmapColor="BlueWhiteRed")