caOmicsV (version 1.2.0)

plotBioMatrixSampleData: Plot Sample Data on caOmicsV bioMatrix Layout

Description

Plot colored polygons on phenotype area of caOmicsV bioMatrix layout to show sample information such as diagnosis, tissue type, ... bioMatrix layout and graphic device must be initialized first.

Usage

plotBioMatrixSampleData(rowNumber, areaName, fillColor=NA,  borderColor=NA, topAdjust=0, bottomAdjust=0)

Arguments

rowNumber

non-negative integer, number of the row where the data to be plotted

areaName

character vector, either "phenotype" or "omicsdata"

fillColor

character vector of color names or vector of R color specification

borderColor

character vector or a R colors specification for boarder color

topAdjust

non-negative numeric, height that will be reduced from top

bottomAdjust

non-negative numeric, height that will be reduced from bottom

Value

None

Examples

    initializeBioMatrixPlot(numOfGenes=1, numOfSamples=50)
    showBioMatrixPlotLayout("Gene", paste("Sample", 1:50),  "Diagnosis")

    sampleColor <- c(rep("blue", 25), rep("red", 25))
    plotBioMatrixSampleData(rowNumber=1, sampleColor, areaName="phenotype")