caOmicsV (version 1.2.0)

plotBioNetCircos: Default Plot Method for caOmicsV bioNetCircos Layout

Description

A sample way to plot sample information and genomic data with default settings. This method is mainly for demo purpose. In most cases, users need make changes based on this display, specifically the igraph layout.

Usage

plotBioNetCircos(dataSet, graph=NULL, heatmapMax=NULL, heatmapMin=NULL,  heatmapColor="BlueWhiteRed")

Arguments

dataSet

an object returned from method of getESet() that contains all data for plot

graph

an igraph object generated with one plot dataset, e.g, gene expression value

heatmapColor

character vector, one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed", "YellowToRed", and "Black".

heatmapMax

numeric, maximum value for heatmap plot, set to NULL to use the biggest value in input data set.

heatmapMin

numeric, minimum value for heatmap plot, set to NULL to use the smallest value in input data set.

Value

None

Examples

    data(bionetPlotDemoData)
    plotBioNetCircos(bionetPlotDemoData)