caOmicsV (version 1.2.0)

plotBioNetLines: Line Plot on caOmicsV bioNetCircos Layout

Description

Line plot on caOmicsv bioNetCircos layout. This method plots one track of line for every node. bionetCircos layout and graphic device must be initialized first.

Usage

plotBioNetLines(dataValues, outer, inner, maxValue=NULL, minValue=NULL,  plotColors=rep("black", ncol(dataValues)))

Arguments

dataValues

numeric matrix of plot data

outer

non-negative numeric, the outside boundary of plot area from node center

inner

non-negative numeric, the inside boundary of plot area from node center

maxValue

numeric, the biggest value of plot data

minValue

numeric, the smallest value of plot data

plotColors

character vector or vector of R specification, colours for each sample

Value

None

Examples

    data(bionetPlotDemoData)
    expr <- bionetPlotDemoData$heatmapData[[1]]
    bioNet <- bc3net(expr)

    initializeBioNetCircos(bioNet, totalSamples=60)
    showBioNetNodesLayout()
    plotBioNetLines(expr, outer=13, inner=2)