caOmicsV (version 1.2.0)

plotBioNetPoints: Point Plot on caOmicsV bioNetCircos Layout

Description

Point plot on caOmicsv bioNetCircos layout. This method plots one track of points for every node. bioNetCircos layout and graphic device must be initialized first.

Usage

plotBioNetPoints(dataValues, maxValue=NULL,  minValue=NULL, outer, inner,  plotColors=rep("black", ncol(dataValues)),  sizeByValue=FALSE, pch=".")

Arguments

dataValues

numeric matrix of plot data

maxValue

numeric, the biggest value of plot data

minValue

numeric, the smallest value of plot data

outer

non-negative numeric, the outer boundary of plot area from node center

inner

non-negative numeric, the inner boundary of plot area from node center

plotColors

character vector or vector of R color specification, colors for each sample

sizeByValue

logic, if true, the data value will be used for point size

pch

character for point type, same as the one in par()

Value

None

Examples

    data(bionetPlotDemoData)
    expr <- bionetPlotDemoData$heatmapData[[1]]
    bioNet <- bc3net(expr)

    initializeBioNetCircos(bioNet, totalSamples=60)
    showBioNetNodesLayout()
    plotBioNetPoints(expr, outer=3, inner=2)