setBioNetPlotParameters


    non-negative integer, total number of samples to be plotted
    

totalSamples


    non-negative integer, number of points of a sample on the circular line
    

sampleWidth


    non-negative numeric, radius of the node
    

nodeRadius


    non-negative numeric, padding width in inch between two nodes
    

nodePadding


    non-negative numeric, total width of plot area.
    

plotAreaWidth


    Set up plot parameters for bioNetCircos layout including of totalSamples, 
    sampleWidth, nodeRadius, nodePadding, plotAreaWidth, outer and inner 
    boundaries of plotArea, as well as default plot colors. This function is 
    for internal used only.


 methods 

caOmicsV package provides methods to visualize
multi-dimentional cancer genomics data including of patient
information, gene expressions, DNA methylations, DNA copy
number variations, and SNP/mutations in matrix layout or
network layout.

Hongen Zhang

caOmicsV

Visualization of multi-dimentional cancer genomics data

setBioNetPlotParameters function

non-negative integer, total number of samples to be plotted

non-negative integer, number of points of a sample on the circular line

non-negative numeric, padding width in inch between two nodes

non-negative numeric, total width of plot area.

Set up plot parameters for bioNetCircos layout including of totalSamples, 
    sampleWidth, nodeRadius, nodePadding, plotAreaWidth, outer and inner 
    boundaries of plotArea, as well as default plot colors. This function is 
    for internal used only.

setBioNetPlotParameters: Initialize Plot Parameters for caOmicsV bioNetCircos Plot

Description

Usage

Arguments

Value

Examples