caOmicsV (version 1.2.0)

showBioMatrixPlotLayout: Display caOmicsV bioMatrix Layout

Description

Display caOmicsV bioMatrix layout with default information for each plot area for purpose of optimizing the layout. A bioMatrix layout must be initialized first.

Usage

showBioMatrixPlotLayout(geneNames, sampleNames, phenotypes,  secondGeneNames,  sampleColors=NULL, geneColors=NULL,  phenoColors=NULL)

Arguments

geneNames

character vector, gene names shown at left side of omics data plot area

sampleNames

character vector, sample names shown on the top of phenotype plot area

phenotypes

character vector, phenotype names listed on left side of phenotype plot area

secondGeneNames

character vector, second gene names shown at right side of omics data area

sampleColors

character vector for color name(s) of R color specification for samples

geneColors

character vector of color name or R color specification for genes

phenoColors

character vector of color name(s) or R color specification for phenotypes

Value

None

Examples

    initializeBioMatrixPlot(numOfGenes=1, numOfSamples=50)
    showBioMatrixPlotLayout(geneNames="Gene", 
            sampleNames=paste("Sample", 1:50),  
            phenotypes="Diagnosis", secondGeneNames="miRNA")