msebmtcal_cmprsk

Used in vignette/article: Comparison-with-graphical-calibration-curves-in-competing-risks-setting.

datasets

Assess the calibration of an existing (i.e. previously developed) multistate
model through calibration plots.
Calibration is assessed using one of three methods. 1) Calibration methods for
binary logistic regression models applied at a fixed time point in conjunction
with inverse probability of censoring weights. 2) Calibration methods for
multinomial logistic regression models applied at a fixed time point in conjunction
with inverse probability of censoring weights. 3) Pseudo-values estimated using
the Aalen-Johansen estimator of observed risk. All methods are applied in conjunction
with landmarking when required. These calibration plots evaluate the calibration
(in a validation cohort of interest) of the transition probabilities estimated from an
existing multistate model. While package development has focused on multistate
models, calibration plots can be produced for any model which utilises information
post baseline to update predictions (e.g. dynamic models); competing risks models;
or standard single outcome survival models, where predictions can be made at
any landmark time. Please see Pate et al. (2024) <doi:10.1002/sim.10094>
and Pate et al. (2024) <https://alexpate30.github.io/calibmsm/articles/Overview.html>.

Alexander Pate

calibmsm

Calibration Plots for the Transition Probabilities from
Multistate Models

Glen P Martin

msebmtcal_cmprsk function

<div class="section" id="-msebmtcal-cmprsk-">
<h3>'msebmtcal_cmprsk'</h3>
A data frame with 9,116 rows and 8 columns:<dl>
<dt>id</dt>
<dd>Patient indentifier</dd><dt>from</dt>
<dd>transition from state</dd><dt>to</dt>
<dd>transition to state</dd><dt>trans</dt>
<dd>transition number</dd><dt>Tstart</dt>
<dd>time entered state 'from'</dd><dt>Tstop</dt>
<dd>time leaving state 'from'</dd><dt>time</dt>
<dd>time in state 'from'</dd><dt>status</dt>
<dd>event indicator, 1:transitioned to state 'to'</dd>
</dl></div>

Format

European Group for Blood and Marrow Transplantation data in competing risks format, for transitions out of the initial state only — msebmtcal_cmprsk

<div class='section' id='-msebmtcal-cmprsk-'>
<h3>'msebmtcal_cmprsk'</h3>


A data frame with 9,116 rows and 8 columns:<dl>
<dt>id</dt>
<dd>Patient indentifier</dd>

<dt>from</dt>
<dd>transition from state</dd>

<dt>to</dt>
<dd>transition to state</dd>

<dt>trans</dt>
<dd>transition number</dd>

<dt>Tstart</dt>
<dd>time entered state 'from'</dd>

<dt>Tstop</dt>
<dd>time leaving state 'from'</dd>

<dt>time</dt>
<dd>time in state 'from'</dd>

<dt>status</dt>
<dd>event indicator, 1:transitioned to state 'to'</dd>


</dl>

</div>

msebmtcal_cmprsk: European Group for Blood and Marrow Transplantation data in competing risks format, for transitions out of the initial state only

Description

Usage

Arguments

Format

'msebmtcal_cmprsk'

Details

References