acacia

Dataset of Australian Acacia from Mishler et al. 2014 (Nat. Comm.)

datasets

Provides functions to analyze the spatial distribution of
biodiversity, in particular categorical analysis of neo- and paleo-endemism
(CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>.
'canaper' conducts statistical tests to determine the types of endemism that
occur in a study area while accounting for the evolutionary relationships of
species.

Joel Nitta

canaper

Categorical Analysis of Neo- And Paleo-Endemism

Joel H. Nitta

Shawn W. Laffan

Brent D. Mishler

Wataru Iwasaki

Klaus Schliep

acacia function

A list with two elements:<dl>
<dt>phy</dt>
<dd>Phylogeny of Australian Acacia (list of class "phylo").
Tip labels are specific epithet, except for the outgroup, which includes
genus and specific epithet. Includes 508 ingroup taxa (genus Acacia)
and two outgroup taxa.</dd><dt>comm</dt>
<dd>Community matrix of Australian Acacia (dataframe).
Column names are specific epithet of each species. Row names are centroids
of 50km grid cells in Australian Albers equal area EPSG:3577 projection.
3037 rows (sites) x 506 columns (species). Data are counts, i.e., the
number of times a species was observed in a grid cell.</dd>
</dl>

Format

Acacia example data — acacia

A list with two elements:<dl>
<dt>phy</dt>
<dd>Phylogeny of Australian Acacia (list of class "phylo").
Tip labels are specific epithet, except for the outgroup, which includes
genus and specific epithet. Includes 508 ingroup taxa (genus Acacia)
and two outgroup taxa.</dd>

<dt>comm</dt>
<dd>Community matrix of Australian Acacia (dataframe).
Column names are specific epithet of each species. Row names are centroids
of 50km grid cells in Australian Albers equal area EPSG:3577 projection.
3037 rows (sites) x 506 columns (species). Data are counts, i.e., the
number of times a species was observed in a grid cell.</dd>


</dl>

acacia: Acacia example data

Description

Usage

Arguments

Format

References

Examples