biod_example

Fictional data for testing purposes from
<a href="https://github.com/shawnlaffan/biodiverse/tree/master/data">Biodiverse</a>.

datasets

Provides functions to analyze the spatial distribution of
biodiversity, in particular categorical analysis of neo- and paleo-endemism
(CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>.
'canaper' conducts statistical tests to determine the types of endemism that
occur in a study area while accounting for the evolutionary relationships of
species.

Joel Nitta

canaper

Categorical Analysis of Neo- And Paleo-Endemism

Joel H. Nitta

Shawn W. Laffan

Brent D. Mishler

Wataru Iwasaki

Klaus Schliep

biod_example function

A list with two elements:<dl>
<dt>phy</dt>
<dd>Phylogeny with 31 tips</dd><dt>comm</dt>
<dd>Community matrix with 127 sites and 31 species.
Data are counts, i.e., the number of times
a species was observed in a grid cell.</dd>
</dl>

Format

Fictional data for testing purposes from
<a href='https://github.com/shawnlaffan/biodiverse/tree/master/data'>Biodiverse</a>.

Biodiverse example data — biod_example

A list with two elements:<dl>
<dt>phy</dt>
<dd>Phylogeny with 31 tips</dd>

<dt>comm</dt>
<dd>Community matrix with 127 sites and 31 species.
Data are counts, i.e., the number of times
a species was observed in a grid cell.</dd>


</dl>

biod_example: Biodiverse example data

Description

Usage

Arguments

Format

Details

References

Examples