phylocom

Fictional data for testing purposes from
<a href="https://www.phylodiversity.net/phylocom/">Phylocom</a> (Webb et al. 2008)

datasets

Provides functions to analyze the spatial distribution of
biodiversity, in particular categorical analysis of neo- and paleo-endemism
(CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>.
'canaper' conducts statistical tests to determine the types of endemism that
occur in a study area while accounting for the evolutionary relationships of
species.

Joel Nitta

canaper

Categorical Analysis of Neo- And Paleo-Endemism

Joel H. Nitta

Shawn W. Laffan

Brent D. Mishler

Wataru Iwasaki

Klaus Schliep

phylocom function

A list with three elements:<dl>
<dt>phylo</dt>
<dd>Phylogeny with 32 tips</dd><dt>sample</dt>
<dd>Community matrix with 6 sites (rows) and 25 species
(columns).</dd><dt>traits</dt>
<dd>Trait data; a data.frame with 32 species (rows) and 4 traits
(columns)</dd>
</dl>

Format

Fictional data for testing purposes from
<a href='https://www.phylodiversity.net/phylocom/'>Phylocom</a> (Webb et al. 2008)

Phylocom example data — phylocom

A list with three elements:<dl>
<dt>phylo</dt>
<dd>Phylogeny with 32 tips</dd>

<dt>sample</dt>
<dd>Community matrix with 6 sites (rows) and 25 species
(columns).</dd>

<dt>traits</dt>
<dd>Trait data; a data.frame with 32 species (rows) and 4 traits
(columns)</dd>


</dl>

phylocom: Phylocom example data

Description

Usage

Arguments

Format

Details

References

Examples