cancerGI-package

cancerGI

This package contains statistical analyses performed in Wang, Fu, et al. (2014) for the genomic data from the TCGA breast cancer patients, as well as for the RNAi knockdown data.

 package

Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network). Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. <doi:10.1038/ncomms5828>.

Audrey Q Fu

Analyses of Cancer Gene Interaction

cancerGI-package function

Audrey Qiuyan Fu, Xiaoyue Wang
Maintainer: Audrey Fu &lt;audreyqyfu@gmail.com&gt;

Package:	cancerGI
Type:	Package
Version:	1.0
Date:	2015-04-19
License:	What license is it under?

cancerGI-package: Statistical Analyses of Genetic Interactions in Cancer

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