survival

Data set that contains the survival time (in months), survival status and other information of patients.

datasets

Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network). Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. <doi:10.1038/ncomms5828>.

Audrey Q Fu

cancerGI

Analyses of Cancer Gene Interaction

survival function

A data frame with 950 observations on the following 5 variables.<dl>
 <dt><code>CaseID</code></dt>
<dd>A vector of character strings</dd> <dt><code>OverallSurvivalMonths</code></dt>
<dd>A numeric vector</dd> <dt><code>OverallSurvivalStatus</code></dt>
<dd>A factor with levels <code></code> <code>DECEASED</code> <code>LIVING</code></dd> <dt><code>MutationCount</code></dt>
<dd>A numeric vector</dd> <dt><code>FractionOfCopyNumberAlteredGenome</code></dt>
<dd>A numeric vector</dd> 
</dl>

Format

Patient survival data. — survival

A data frame with 950 observations on the following 5 variables.<dl>
 <dt><code>CaseID</code></dt>
<dd>A vector of character strings</dd>

 <dt><code>OverallSurvivalMonths</code></dt>
<dd>A numeric vector</dd>

 <dt><code>OverallSurvivalStatus</code></dt>
<dd>A factor with levels <code></code> <code>DECEASED</code> <code>LIVING</code></dd>

 <dt><code>MutationCount</code></dt>
<dd>A numeric vector</dd>

 <dt><code>FractionOfCopyNumberAlteredGenome</code></dt>
<dd>A numeric vector</dd>

 
</dl>

survival: Patient survival data.

Description

Arguments

Format

References

Examples