cancerTiming (version 3.1.6)

mutData: Example Mutation Data

Description

Example mutation data

Usage

data(mutData)

source

Durinck, S, et al. (2011). ``Temporal Dissection of Tumorigenesis in Primary Cancers." Cancer Discovery, 1(2), 137-143.

Details

Mutation data from chr17. The CNLOH region is from positions 0 to 1.8E7. The normal contamination estimate in the paper was given as 0.22.

Examples

data(mutData)
head(mutData)
#only mutations in the CNLOH region
onlyMuts<-subset(mutData,is.na(rsID) & position <= 1.8E7)