cancerradarr (version 3.0.0)

diagnose_input_file: Diagnose Input File for Data Quality Issues

Description

This function checks the input file for common data quality issues that can cause errors during processing, including duplicate age groups and unexpected age group labels.

Usage

diagnose_input_file(filename.in)

Value

A list containing diagnostic information:

• duplicate_age_groups: Data frame of combinations with duplicate age groups

• invalid_age_groups: Character vector of invalid age group labels found

• summary: Overall summary of issues found

Arguments

filename.in

file path, the file containing the 5 years age counts of cancers stratified per cancer type, sex and country of birth

Examples

# \donttest{
  file.in <- system.file("extdata", "ex_cancerRADAR_input_filled.xlsx",
                         package = "cancerradarr")
  diagnosis <- diagnose_input_file(file.in)
  print(diagnosis$summary)
# }