filter.hwe


	The object in which all results are stored. See <code><a rd-options="" href="/link/read.population?package=cape&version=2.0.2" data-mini-rdoc="cape::read.population">read.population</a></code>.
	

data.obj


	The object in which the genotype object is stored.
	

geno.obj


	The p value below which markers are considered out of HWE. 
	

p.thresh


	A logical value to indicate whether to run the process in parallel.
	

run.parallel


		An integer specifying the number of cores to be used in parallel processing.	

n.cores


This function tests markers for Hardy-Weinberg equilibrium (HWE) and removes markers that are significantly out of HWE.


manip

univar

Combines complementary information across multiple related
phenotypes to infer directed epistatic interactions between genetic markers.
This analysis can be applied to a variety of engineered and natural populations.

Anna L Tyler

cape

Combined Analysis of Pleiotropy and Epistasis

filter.hwe function


	The object in which all results are stored. See <code><a rd-options='' href='read.population'>read.population</a></code>.
	

filter.hwe: Filter markers by Hardy-Weinberg equilibrium

Description

Usage

Arguments

Value

References