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cape (version 2.0.2)

get.chr.markers: Calculate a genome-wide significance threshold for the single-variant scan

Description

This function finds all marker pairs on a given pair of chromosomes

Usage

get.chr.markers(chr.pair, marker.chr, paired.markers)

Arguments

chr.pair
The chromosome pair in question.
marker.chr
A matrix with two columns with an entry for each marker pair indicating which chromosome each marker is on.
paired.markers
A matrix with two columns indicating all marker pairs being tested.

Value

Returns all marker pairs on the chromosomes specified.