select.eigentraits


	The object in which all results are stored. See <code><a rd-options="" href="/link/read.population?package=cape&version=2.0.2" data-mini-rdoc="cape::read.population">read.population</a></code>.


data.obj


A numeric vector indicating which eigentraits should be retained for further analysis.


traits.which


This function selects the specified eigentraits for further analysis. After the singular value decomposition (SVD) of multiple traits by <code><a rd-options="" href="/link/get.eigentraits?package=cape&version=2.0.2" data-mini-rdoc="cape::get.eigentraits">get.eigentraits</a></code>, a subset of the eigentraits, for example the first two, may carry useful information, while others may be dominated by noise. In this case, this function can be used to select the first two eigentraits for use in the analysis. 


manip

Combines complementary information across multiple related
phenotypes to infer directed epistatic interactions between genetic markers.
This analysis can be applied to a variety of engineered and natural populations.

Anna L Tyler

cape

Combined Analysis of Pleiotropy and Epistasis

select.eigentraits function


	The object in which all results are stored. See <code><a rd-options='' href='read.population'>read.population</a></code>.



This function selects the specified eigentraits for further analysis. After the singular value decomposition (SVD) of multiple traits by <code><a rd-options='' href='get.eigentraits'>get.eigentraits</a></code>, a subset of the eigentraits, for example the first two, may carry useful information, while others may be dominated by noise. In this case, this function can be used to select the first two eigentraits for use in the analysis. 


select.eigentraits: Select a subset of the eigentraits for further analysis

Description

Usage

Arguments

Value

Details

References

See Also