cape (version 3.1.1)

get_marker_chr: Get chromosome numbers for markers

Description

Given a vector of marker names or numbers, this function returns the chromosome on which each marker lives.Covariates are assigned to chromosome 0.

Usage

get_marker_chr(data_obj, markers, character_names = TRUE)

Value

A vector the same length as the input markers vector indicating which chromosome each marker in markers lives on.

Arguments

data_obj

a Cape object

markers

A vector of marker names

character_names

A logical value indicating whether the marker names are characters (TRUE) or numbers (FALSE)

Examples

if (FALSE) {
marker_names <- dimnames(geno_obj)[[3]]
marker_chr <- get_marker_chr(data_obj, marker_names)
}