get_interaction_error

This function gets error bars for an interaction plot
it takes in the x, y, and trace factor of the interaction
plot and returns a vector indicating how much should
default error type is standard error

internal

Combined Analysis of Pleiotropy and Epistasis infers predictive
networks between genetic variants and phenotypes. It can be used with
standard two-parent populations as well as multi-parent populations, such
as the Diversity Outbred (DO) mice, Collaborative Cross (CC) mice, or the
multi-parent advanced generation intercross (MAGIC) population of Arabidopsis
thaliana. It uses complementary information of pleiotropic gene variants across
different phenotypes to resolve models of epistatic interactions between alleles.
To do this, cape reparametrizes main effect and interaction coefficients from
pairwise variant regressions into directed influence parameters. These
parameters describe how alleles influence each other, in terms of suppression
and enhancement, as well as how gene variants influence phenotypes. All of the
final interactions are reported as directed interactions between pairs of
parental alleles. For detailed descriptions of the methods used in this package
please see the following references.
Carter, G. W., Hays, M., Sherman, A. & Galitski, T. (2012) <doi:10.1371/journal.pgen.1003010>.
Tyler, A. L., Lu, W., Hendrick, J. J., Philip, V. M. & Carter, G. W. (2013) <doi:10.1371/journal.pcbi.1003270>.

Anna L Tyler

cape

Combined Analysis of Pleiotropy and Epistasis for Diversity
Outbred Mice

Anna Tyler

Jake Emerson

Baha El Kassaby

Ann Wells

Georgi Kolishovski

Vivek Philip

Gregory Carter

get_interaction_error function

<dl><dt>x</dt>
<dd>The vector whose levels will form the x axis</dd>
<dt>y</dt>
<dd>The vector whose levels will form the y axis, 
the response vector i.e.</dd>
<dt>trace</dt>
<dd>Another vector whose levels will form the traces</dd>
<dt>error_type</dt>
<dd>Either "sd" for standard deviation, or
"se" for standard error.</dd></dl>

Arguments

Get error bars for interaction plot — get_interaction_error

<dl>

<dt>x</dt>
<dd>The vector whose levels will form the x axis</dd>


<dt>y</dt>
<dd>The vector whose levels will form the y axis, 
the response vector i.e.</dd>


<dt>trace</dt>
<dd>Another vector whose levels will form the traces</dd>


<dt>error_type</dt>
<dd>Either "sd" for standard deviation, or
"se" for standard error.</dd>

</dl>

Get error bars for interaction plot

get_interaction_error: Get error bars for interaction plot

Description

Usage

Value

Arguments