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caret (version 4.05)

Classification and Regression Training

Description

Misc functions for training and plotting classification and regression models

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Version

Install

install.packages('caret')

Monthly Downloads

163,965

Version

4.05

License

GPL-2

Maintainer

Max Kuhn

Last Published

December 10th, 2024

Functions in caret (4.05)

print.train

Print Method for the train Class
format.bagEarth

Format 'bagEarth' objects
predictors

List predictors used in the model
Alternate Affy Gene Expression Summary Methods.

Generate Expression Values from Probes
summary.bagEarth

Summarize a bagged earth or FDA fit
resampleSummary

Summary of resampled performance estimates
confusionMatrix

Create a confusion matrix
plotClassProbs

Plot Predicted Probabilities in Classification Models
createDataPartition

Data Splitting functions
caret-internal

Internal Functions
filterVarImp

Calculation of filter-based variable importance
BloodBrain

Blood Brain Barrier Data
oil

Fatty acid composition of commercial oils
findCorrelation

Determine highly correlated variables
normalize2Reference

Quantile Normalize Columns of a Matrix Based on a Reference Distribution
plotObsVsPred

Plot Observed versus Predicted Results in Regression and Classification Models
predict.train

Extract predictions and class probabilities from train objects
nearZeroVar

Identification of near zero variance predictors
cox2

COX-2 Activity Data
normalize.AffyBatch.normalize2Reference

Quantile Normalization to a Reference Distribution
pottery

Pottery from Pre-Classical Sites in Italy
plot.varImp.train

Plotting variable importance measures
predict.bagEarth

Predicted values based on bagged Earth and FDA models
print.confusionMatrix

Print method for confusionMatrix
sensitivity

Calculate sensitivity, specificity and predictive values
dotPlot

Create a dotplot of variable importance values
spatialSign

Compute the multivariate spatial sign
trainControl

Control parameters for train
varImp

Calculation of variable importance for regression and classification models
resampleHist

Plot the resampling distribution of the model statistics
histogram.train

Lattice functions for plotting resampling results
preProcess

Pre-Processing of Predictors
plot.train

Plot Method for the train Class
bagEarth

Bagged Earth
applyProcessing

Data Processing on Predictor Variables (Deprecated)
mdrr

Multidrug Resistance Reversal (MDRR) Agent Data
maxDissim

Maximum Dissimilarity Sampling
predict.knn3

Predictions from k-Nearest Neighbors
roc

Compute the points for an ROC curve
plsda

Partial Least Squares Discriminant Analysis
train

Fit Predictive Models over Different Tuning Parameters
oneSE

Selecting tuning Parameters
tecator

Fat, Water and Protein Content of Maat Samples
aucRoc

Compute the area under an ROC curve
findLinearCombos

Determine linear combinations in a matrix
createGrid

Tuning Parameter Grid
panel.needle

Needle Plot Lattice Panel
bagFDA

Bagged FDA
postResample

Calculates performance across resamples
featurePlot

Wrapper for Lattice Plotting of Predictor Variables
as.table.confusionMatrix

Save Confusion Table Results
pcaNNet.default

Neural Networks with a Principal Component Step
knn3

k-Nearest Neighbour Classification