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caret (version 4.33)

Classification and Regression Training

Description

Misc functions for training and plotting classification and regression models

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Version

Install

install.packages('caret')

Monthly Downloads

230,598

Version

4.33

License

GPL-2

Maintainer

Max Kuhn

Last Published

March 1st, 2010

Functions in caret (4.33)

caret-internal

Internal Functions
print.confusionMatrix

Print method for confusionMatrix
print.train

Print Method for the train Class
maxDissim

Maximum Dissimilarity Sampling
preProcess

Pre-Processing of Predictors
train

Fit Predictive Models over Different Tuning Parameters
roc

Compute the points for an ROC curve
oneSE

Selecting tuning Parameters
bagEarth

Bagged Earth
classDist

Compute and predict the distances to class centroids
normalize.AffyBatch.normalize2Reference

Quantile Normalization to a Reference Distribution
plotClassProbs

Plot Predicted Probabilities in Classification Models
pcaNNet.default

Neural Networks with a Principal Component Step
plsda

Partial Least Squares and Sparse Partial Least Squares Discriminant Analysis
caretFuncs

Backwards Feature Selection Helper Functions
mdrr

Multidrug Resistance Reversal (MDRR) Agent Data
filterVarImp

Calculation of filter-based variable importance
bagFDA

Bagged FDA
knnreg

k-Nearest Neighbour Regression
format.bagEarth

Format 'bagEarth' objects
featurePlot

Wrapper for Lattice Plotting of Predictor Variables
aucRoc

Compute the area under an ROC curve
Alternate Affy Gene Expression Summary Methods.

Generate Expression Values from Probes
nullModel

Fit a simple, non-informative model
createGrid

Tuning Parameter Grid
predict.knn3

Predictions from k-Nearest Neighbors
knn3

k-Nearest Neighbour Classification
lattice.rfe

Lattice functions for plotting resampling results of recursive feature selection
rfe

Backwards Feature Selection
nearZeroVar

Identification of near zero variance predictors
predict.train

Extract predictions and class probabilities from train objects
pottery

Pottery from Pre-Classical Sites in Italy
findLinearCombos

Determine linear combinations in a matrix
findCorrelation

Determine highly correlated variables
histogram.train

Lattice functions for plotting resampling results
predict.knnreg

Predictions from k-Nearest Neighbors Regression Model
applyProcessing

Data Processing on Predictor Variables (Deprecated)
BloodBrain

Blood Brain Barrier Data
sensitivity

Calculate sensitivity, specificity and predictive values
postResample

Calculates performance across resamples
resampleHist

Plot the resampling distribution of the model statistics
predict.bagEarth

Predicted values based on bagged Earth and FDA models
caretSBF

Selection By Filtering (SBF) Helper Functions
predictors

List predictors used in the model
cox2

COX-2 Activity Data
as.table.confusionMatrix

Save Confusion Table Results
sbfControl

Control Object for Selection By Filtering (SBF)
panel.needle

Needle Plot Lattice Panel
plot.train

Plot Method for the train Class
dotPlot

Create a dotplot of variable importance values
plot.varImp.train

Plotting variable importance measures
normalize2Reference

Quantile Normalize Columns of a Matrix Based on a Reference Distribution
rfeControl

Controlling the Feature Selection Algorithms
plotObsVsPred

Plot Observed versus Predicted Results in Regression and Classification Models
sbf

Selection By Filtering (SBF)
resampleSummary

Summary of resampled performance estimates
createDataPartition

Data Splitting functions
oil

Fatty acid composition of commercial oils
confusionMatrix

Create a confusion matrix
tecator

Fat, Water and Protein Content of Maat Samples
spatialSign

Compute the multivariate spatial sign
varImp

Calculation of variable importance for regression and classification models
trainControl

Control parameters for train
summary.bagEarth

Summarize a bagged earth or FDA fit