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caret (version 4.42)

Classification and Regression Training

Description

Misc functions for training and plotting classification and regression models

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Install

install.packages('caret')

Monthly Downloads

221,361

Version

4.42

License

GPL-2

Maintainer

Last Published

June 11th, 2010

Functions in caret (4.42)

cox2

COX-2 Activity Data
mdrr

Multidrug Resistance Reversal (MDRR) Agent Data
preProcess

Pre-Processing of Predictors
caret-internal

Internal Functions
cars

Kelly Blue Book resale data for 2005 model year GM cars
bagFDA

Bagged FDA
aucRoc

Compute the area under an ROC curve
postResample

Calculates performance across resamples
print.train

Print Method for the train Class
knnreg

k-Nearest Neighbour Regression
dotPlot

Create a dotplot of variable importance values
predict.train

Extract predictions and class probabilities from train objects
oil

Fatty acid composition of commercial oils
plotObsVsPred

Plot Observed versus Predicted Results in Regression and Classification Models
resampleHist

Plot the resampling distribution of the model statistics
rfeControl

Controlling the Feature Selection Algorithms
trainControl

Control parameters for train
classDist

Compute and predict the distances to class centroids
plot.train

Plot Method for the train Class
resamples

Collation and Visualization of Resampling Results
sensitivity

Calculate sensitivity, specificity and predictive values
train

Fit Predictive Models over Different Tuning Parameters
confusionMatrix

Create a confusion matrix
findLinearCombos

Determine linear combinations in a matrix
maxDissim

Maximum Dissimilarity Sampling
pottery

Pottery from Pre-Classical Sites in Italy
predict.knn3

Predictions from k-Nearest Neighbors
as.table.confusionMatrix

Save Confusion Table Results
dhfr

Dihydrofolate Reductase Inhibitors Data
format.bagEarth

Format 'bagEarth' objects
findCorrelation

Determine highly correlated variables
normalize.AffyBatch.normalize2Reference

Quantile Normalization to a Reference Distribution
pcaNNet.default

Neural Networks with a Principal Component Step
sbf

Selection By Filtering (SBF)
tecator

Fat, Water and Protein Content of Meat Samples
summary.bagEarth

Summarize a bagged earth or FDA fit
createGrid

Tuning Parameter Grid
applyProcessing

Data Processing on Predictor Variables (Deprecated)
filterVarImp

Calculation of filter-based variable importance
Alternate Affy Gene Expression Summary Methods.

Generate Expression Values from Probes
normalize2Reference

Quantile Normalize Columns of a Matrix Based on a Reference Distribution
nullModel

Fit a simple, non-informative model
predictors

List predictors used in the model
resampleSummary

Summary of resampled performance estimates
varImp

Calculation of variable importance for regression and classification models
sbfControl

Control Object for Selection By Filtering (SBF)
createDataPartition

Data Splitting functions
icr.formula

Independent Component Regression
lattice.rfe

Lattice functions for plotting resampling results of recursive feature selection
panel.needle

Needle Plot Lattice Panel
print.confusionMatrix

Print method for confusionMatrix
plotClassProbs

Plot Predicted Probabilities in Classification Models
rfe

Backwards Feature Selection
spatialSign

Compute the multivariate spatial sign
BloodBrain

Blood Brain Barrier Data
diff.resamples

Inferential Assessments About Model Performance
bagEarth

Bagged Earth
featurePlot

Wrapper for Lattice Plotting of Predictor Variables
histogram.train

Lattice functions for plotting resampling results
xyplot.resamples

Lattice Functions for Visualizing Resampling Results
plot.varImp.train

Plotting variable importance measures
plsda

Partial Least Squares and Sparse Partial Least Squares Discriminant Analysis
caretFuncs

Backwards Feature Selection Helper Functions
roc

Compute the points for an ROC curve
oneSE

Selecting tuning Parameters
caretSBF

Selection By Filtering (SBF) Helper Functions
predict.bagEarth

Predicted values based on bagged Earth and FDA models
predict.knnreg

Predictions from k-Nearest Neighbors Regression Model
knn3

k-Nearest Neighbour Classification
nearZeroVar

Identification of near zero variance predictors
dotplot.diff.resamples

Lattice Functions for Visualizing Resampling Differences