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caret (version 6.0-34)

Classification and Regression Training

Description

Misc functions for training and plotting classification and regression models

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Version

Install

install.packages('caret')

Monthly Downloads

222,842

Version

6.0-34

License

GPL-2

Maintainer

Max Kuhn

Last Published

August 15th, 2014

Functions in caret (6.0-34)

avNNet.default

Neural Networks Using Model Averaging
confusionMatrix.train

Estimate a Resampled Confusion Matrix
knn3

k-Nearest Neighbour Classification
diff.resamples

Inferential Assessments About Model Performance
normalize.AffyBatch.normalize2Reference

Quantile Normalization to a Reference Distribution
Alternate Affy Gene Expression Summary Methods.

Generate Expression Values from Probes
plot.train

Plot Method for the train Class
featurePlot

Wrapper for Lattice Plotting of Predictor Variables
plot.varImp.train

Plotting variable importance measures
plotObsVsPred

Plot Observed versus Predicted Results in Regression and Classification Models
findLinearCombos

Determine linear combinations in a matrix
lift

Lift Plot
cars

Kelly Blue Book resale data for 2005 model year GM cars
print.train

Print Method for the train Class
bag.default

A General Framework For Bagging
sbf

Selection By Filtering (SBF)
update.train

Update or Re-fit a Model
format.bagEarth

Format 'bagEarth' objects
as.table.confusionMatrix

Save Confusion Table Results
createDataPartition

Data Splitting functions
knnreg

k-Nearest Neighbour Regression
preProcess

Pre-Processing of Predictors
plot.rfe

Plot RFE Performance Profiles
calibration

Probability Calibration Plot
mdrr

Multidrug Resistance Reversal (MDRR) Agent Data
nullModel

Fit a simple, non-informative model
nearZeroVar

Identification of near zero variance predictors
lattice.rfe

Lattice functions for plotting resampling results of recursive feature selection
normalize2Reference

Quantile Normalize Columns of a Matrix Based on a Reference Distribution
bagFDA

Bagged FDA
classDist

Compute and predict the distances to class centroids
rfeControl

Controlling the Feature Selection Algorithms
filterVarImp

Calculation of filter-based variable importance
resampleSummary

Summary of resampled performance estimates
postResample

Calculates performance across resamples
resampleHist

Plot the resampling distribution of the model statistics
summary.bagEarth

Summarize a bagged earth or FDA fit
sbfControl

Control Object for Selection By Filtering (SBF)
train_model_list

A List of Available Models in train
predict.train

Extract predictions and class probabilities from train objects
findCorrelation

Determine highly correlated variables
print.confusionMatrix

Print method for confusionMatrix
caretSBF

Selection By Filtering (SBF) Helper Functions
plsda

Partial Least Squares and Sparse Partial Least Squares Discriminant Analysis
trainControl

Control parameters for train
oneSE

Selecting tuning Parameters
BoxCoxTrans.default

Box-Cox and Exponential Transformations
histogram.train

Lattice functions for plotting resampling results
confusionMatrix

Create a confusion matrix
xyplot.resamples

Lattice Functions for Visualizing Resampling Results
downSample

Down- and Up-Sampling Imbalanced Data
dhfr

Dihydrofolate Reductase Inhibitors Data
resamples

Collation and Visualization of Resampling Results
BloodBrain

Blood Brain Barrier Data
predict.bagEarth

Predicted values based on bagged Earth and FDA models
GermanCredit

German Credit Data
spatialSign

Compute the multivariate spatial sign
segmentationData

Cell Body Segmentation
varImp

Calculation of variable importance for regression and classification models
dotPlot

Create a dotplot of variable importance values
sensitivity

Calculate sensitivity, specificity and predictive values
modelLookup

Tools for Models Available in train
dotplot.diff.resamples

Lattice Functions for Visualizing Resampling Differences
panel.lift2

Lattice Panel Functions for Lift Plots
dummyVars

Create A Full Set of Dummy Variables
maxDissim

Maximum Dissimilarity Sampling
plotClassProbs

Plot Predicted Probabilities in Classification Models
prcomp.resamples

Principal Components Analysis of Resampling Results
oil

Fatty acid composition of commercial oils
pottery

Pottery from Pre-Classical Sites in Italy
caretFuncs

Backwards Feature Selection Helper Functions
predict.knnreg

Predictions from k-Nearest Neighbors Regression Model
tecator

Fat, Water and Protein Content of Meat Samples
pcaNNet.default

Neural Networks with a Principal Component Step
rfe

Backwards Feature Selection
bagEarth

Bagged Earth
twoClassSim

Simulation Functions
predict.knn3

Predictions from k-Nearest Neighbors
icr.formula

Independent Component Regression
predictors

List predictors used in the model
caret-internal

Internal Functions
panel.needle

Needle Plot Lattice Panel
cox2

COX-2 Activity Data
train

Fit Predictive Models over Different Tuning Parameters