distrsGSE37704


We downloaded the fastq files, aligned with TopHat and processed with
<code>wrapKnown</code> to obtain the estimated distributions for each of the 6
samples. <code>distrsGSE37704</code> is a list with the 6 corresponding elements.
The estimated distributions for HiSeq data were very similar,
hence these distributions can be used as defaults for Illumina MiSeq and
HiSeq experiments.


datasets

Infer alternative splicing from paired-end RNA-seq data.
The model is based on counting paths across exons, rather than
pairwise exon connections, and estimates the fragment size and
start distributions non-parametrically, which improves
estimation precision.

David Rossell

casper

Characterization of Alternative Splicing based on Paired-End
Reads

distrsGSE37704 function

An <code>list</code> with 6 elements of class <code>readDistrs</code>.
  See <code>help(getDistrs)</code> and <code>help(readDistrs-class)</code> for details.

Format

We downloaded the fastq files, aligned with TopHat and processed with
<code>wrapKnown</code> to obtain the estimated distributions for each of the 6
samples. <code>distrsGSE37704</code> is a list with the 6 corresponding elements.
The estimated distributions for HiSeq data were very similar,
hence these distributions can be used as defaults for Illumina MiSeq and
HiSeq experiments.

distrsGSE37704: Estimated read start and insert size distributions from MiSeq data in GEO dataset GSE37704.

Description

Usage

Arguments

Format

Examples