getReads

getReads,procBam-method


<code>procBam</code> objects store reads that have been split according to
their CIGAR codes. <code>getReads</code> accesses these reads.


manip

Infer alternative splicing from paired-end RNA-seq data.
The model is based on counting paths across exons, rather than
pairwise exon connections, and estimates the fragment size and
start distributions non-parametrically, which improves
estimation precision.

David Rossell

casper

Characterization of Alternative Splicing based on Paired-End
Reads

getReads function

<dl>
  <dt><code>signature(x='procBam')</code></dt><dd>
    Return reads stored in <code>x</code>.
  </dd> </dl>

Methods

<code>procBam</code> objects store reads that have been split according to
their CIGAR codes. <code>getReads</code> accesses these reads.

getReads: getReads returns the reads stored in a `procBam` object.

Description

Usage

Arguments

Value

Methods

Examples