hg19DB


We downloaded the human genome hg19 via <code>procGenome</code>
and selected a few genes from chromosome 1
to use as a toy data for the vignette and examples. 


datasets

Infer alternative splicing from paired-end RNA-seq data.
The model is based on counting paths across exons, rather than
pairwise exon connections, and estimates the fragment size and
start distributions non-parametrically, which improves
estimation precision.

David Rossell

casper

Characterization of Alternative Splicing based on Paired-End
Reads

hg19DB function

An <code>annotatedGenome</code> object. See <code>help(procGenome)</code> and
<code>help(annotatedGenome-class)</code> for details.

Format

We downloaded the human genome hg19 via <code>procGenome</code>
and selected a few genes from chromosome 1
to use as a toy data for the vignette and examples.

hg19DB: Subset of human genome (UCSC hg19 version)

Description

Usage

Arguments

Format

Examples