plotPriorAS:
Plot prior distribution on set of expressed variants (i.e. the model space).
Description
Plots the prior distribution on the number of expressed variants and the
number of exons per variant in genes with exons exons
(as returned by function modelPrior).
The prior distribution is compared to the observed frequencies to check
that the assumed distributional forms are reasonable.
Usage
plotPriorAS(object, type="nbVariants", exons=1:9, xlab,
ylab="Probability", col=c("red","blue"))
Arguments
object
modelPriorAS object with prior distribution on
model space.
type
Set to "nbVariants" to plot the prior on the number
of variants per gene. Set to "nbExons" to plot the prior on
the number of exons.
exons
Vector with integers. The plot is only produced with
number of exons indicated in exons.
xlab
x-axis label, passed on to plot
ylab
y-axis label, passed on to plot
col
Colors for bars showing prior probabilities and frequencies
in the known genome
Methods
signature(object = "modelPriorAS")-
object contains the prior distribution on the model space, as
returned by function modelPrior