relexprByGene

<code>ExpressionSet</code> containing relative expressions.
    (typically, adding up to 1 for each island_id)
    Column <code>gene_id</code> in <code>fData(x)</code> should contain a unique
    gene identifier.

If set to <code>TRUE</code>, isoform expressions are
    divided by isoform length before re-normalizing. This is useful for
    taking into account that longer isoforms produce
    more reads than shorter isoforms.

normbylength

If <code>normbylength==TRUE</code>, <code>genomeDB</code> should
    be an <code>annotatedGenome</code> object containing the annotated genome
    (see <code>procGenome</code>)

genomeDB


  Transforms relative expressions that add up to 1 within each gene
  island (the default output of casper) to relative expressions that add
  up to 1 per gene.


 manip 

Infer alternative splicing from paired-end RNA-seq data.
The model is based on counting paths across exons, rather than
pairwise exon connections, and estimates the fragment size and
start distributions non-parametrically, which improves
estimation precision.

David Rossell

casper

Characterization of Alternative Splicing based on Paired-End
Reads

relexprByGene function

Transforms relative expressions that add up to 1 within each gene
  island (the default output of casper) to relative expressions that add
  up to 1 per gene.

relexprByGene: Compute relative expressions within each gene

Description

Usage

Arguments

Value

Examples