subsetGenome

subsetGenome-methods

subsetGenome,character,missing,annotatedGenome-method

subsetGenome,missing,character,annotatedGenome-method

Vector of characters with the island IDs to retrieve
    from genome.

islands

Vector of characters with the names of chromosomes to
    retrieve from genome.

annotatedGenome object with genome to subset.

genomeDB


  ~~ Methods for function <code>subsetGenome</code> in package <span class="pkg">casper</span> ~~
  Subset an annotatedGenome object by islands or chromosomes.
  


methods

 ~~ other possible keyword(s) ~~ 

Infer alternative splicing from paired-end RNA-seq data.
The model is based on counting paths across exons, rather than
pairwise exon connections, and estimates the fragment size and
start distributions non-parametrically, which improves
estimation precision.

David Rossell

casper

Characterization of Alternative Splicing based on Paired-End
Reads

subsetGenome function

<dl> <dt><code>signature(islands = "character", chr = "missing", genomeDB = "annotatedGenome")</code></dt><dd> Subset annotatedGenome object by a set of island IDs.
</dd> <dt><code>signature(islands = "missing", chr = "character", genomeDB = "annotatedGenome")</code></dt><dd> Subset annotatedGenome object by chromosomes.
</dd> </dl>

Methods

~~ Methods for function <code>subsetGenome</code> in package <pkg>casper</pkg> ~~
  Subset an annotatedGenome object by islands or chromosomes.

subsetGenome: subsetGenome subsets an object of class annotatedGenome for a set of island IDs or chromosome names.

Description

Usage

Arguments

Methods