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cassandRa

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Version

Install

install.packages('cassandRa')

Monthly Downloads

604

Version

0.1.0

License

GPL-3

Maintainer

Chris Terry

Last Published

July 3rd, 2019

Functions in cassandRa (0.1.0)

FitBothMandC

Fit Matching-Centrality Model
FitCentrality

Fit Centrality Model
%>%

Pipe operator
TestAllModels

Test the models by AUC
make_true_and_sample_web

Make an artificial bipartite networks with some properties of ecological networks, then sample from it
RarefyNetwork

Recalculate Network Metrics With Rarefied Webs
PredictLinks

Generates a network list from a food web and fits all network models
Optimise_SBM

Custom optimiser function for SBM models
Optimiser

Optimiser wrapper for network models
TestAUC

Test via AUC the predictive capacity of each model or combination of models
SortResponseCategory

Adds a dataframe that defines each interaction as true positive, false negative or true negative
PlotFit

Plot the fitted network models
PlotRarefaction

Plot Metric Response To Network Rarefaction
FitMatching

Fit Latent Trait (Matching Model)
EcoLinkPredict

Predicting Missing Links
CreateListObject

Generates a network list from a food web
FitSBM

Fit SBM Model
FitAllModels

Fit all the models
CoverageEstimator

Coverage Estimator, using Chao1 Index, Turing-Good or Binomial depending on what is possible
CalcHostLevelCoverage

Estimated probabilities of missing links based on the host Level Coverage Deficit
ComputeCI

Compute Basic Confidence Intervals