getBounds

internal

The Cauchy Process can model pulsed continuous trait evolution
on phylogenies. The likelihood is tractable, and is used for parameter
inference and ancestral trait reconstruction.
See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.

Paul Bastide

cauphy

Trait Evolution on Phylogenies Using the Cauchy Process

Gilles Didier

getBounds function

<dl><dt>model</dt>
<dd>the model</dd>
<dt>phy</dt>
<dd>the phylogenetic tree</dd>
<dt>X</dt>
<dd>model matrix</dd>
<dt>y</dt>
<dd>the response vector</dd>
<dt>values</dt>
<dd>the input values for the bound</dd>
<dt>default.values</dt>
<dd>the default values for the bound</dd></dl>

Arguments

Get bounds — getBounds

<dl>

<dt>model</dt>
<dd>the model</dd>


<dt>phy</dt>
<dd>the phylogenetic tree</dd>


<dt>X</dt>
<dd>model matrix</dd>


<dt>y</dt>
<dd>the response vector</dd>


<dt>values</dt>
<dd>the input values for the bound</dd>


<dt>default.values</dt>
<dd>the default values for the bound</dd>

</dl>

getBounds: Get bounds

Description

Usage

Arguments