getBoundsCauchy

internal

The Cauchy Process can model pulsed continuous trait evolution
on phylogenies. The likelihood is tractable, and is used for parameter
inference and ancestral trait reconstruction.
See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.

Paul Bastide

cauphy

Trait Evolution on Phylogenies Using the Cauchy Process

Gilles Didier

getBoundsCauchy function

<dl><dt>phy</dt>
<dd>the phylogenetic tree</dd>
<dt>X</dt>
<dd>model matrix</dd>
<dt>y</dt>
<dd>the response vector</dd>
<dt>values</dt>
<dd>the input values for the bound</dd>
<dt>default.values</dt>
<dd>the default values for the bound</dd></dl>

Arguments

Get bound for a Cauchy process — getBoundsCauchy

<dl>

<dt>phy</dt>
<dd>the phylogenetic tree</dd>


<dt>X</dt>
<dd>model matrix</dd>


<dt>y</dt>
<dd>the response vector</dd>


<dt>values</dt>
<dd>the input values for the bound</dd>


<dt>default.values</dt>
<dd>the default values for the bound</dd>

</dl>

getBoundsCauchy: Get bound for a Cauchy process

Description

Usage

Arguments