getStartingValuesCauchy

Get starting values for a Cauchy process

internal

The Cauchy Process can model pulsed continuous trait evolution
on phylogenies. The likelihood is tractable, and is used for parameter
inference and ancestral trait reconstruction.
See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.

Paul Bastide

cauphy

Trait Evolution on Phylogenies Using the Cauchy Process

Gilles Didier

getStartingValuesCauchy function

<dl><dt>phy</dt>
<dd>the phylogenetic tree</dd>
<dt>X</dt>
<dd>model matrix</dd>
<dt>y</dt>
<dd>the response vector</dd>
<dt>starting.value</dt>
<dd>the input starting values</dd></dl>

Arguments

Get starting values for a Cauchy — getStartingValuesCauchy

<dl>

<dt>phy</dt>
<dd>the phylogenetic tree</dd>


<dt>X</dt>
<dd>model matrix</dd>


<dt>y</dt>
<dd>the response vector</dd>


<dt>starting.value</dt>
<dd>the input starting values</dd>

</dl>

getStartingValuesCauchy: Get starting values for a Cauchy

Description

Usage

Arguments