initLambdaParameter

internal

The Cauchy Process can model pulsed continuous trait evolution
on phylogenies. The likelihood is tractable, and is used for parameter
inference and ancestral trait reconstruction.
See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.

Paul Bastide

cauphy

Trait Evolution on Phylogenies Using the Cauchy Process

Gilles Didier

initLambdaParameter function

<dl><dt>trait</dt>
<dd>named vector of traits at the tips.</dd>
<dt>disp_hat</dt>
<dd>the previously estimated dispersion</dd>
<dt>tol</dt>
<dd>the percentage of tip pairs to keep for the computation. Default to 0.1.</dd></dl>

Arguments

Initialization of the lambda parameter. — initLambdaParameter

<dl>

<dt>trait</dt>
<dd>named vector of traits at the tips.</dd>


<dt>disp_hat</dt>
<dd>the previously estimated dispersion</dd>


<dt>tol</dt>
<dd>the percentage of tip pairs to keep for the computation. Default to 0.1.</dd>

</dl>

initLambdaParameter: Initialization of the lambda parameter.

Description

Usage

Value

Arguments

Details