minusLikelihoodFixedRoot

Gives the minus likelihood function, with fixed root.

internal

The Cauchy Process can model pulsed continuous trait evolution
on phylogenies. The likelihood is tractable, and is used for parameter
inference and ancestral trait reconstruction.
See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.

Paul Bastide

cauphy

Trait Evolution on Phylogenies Using the Cauchy Process

Gilles Didier

minusLikelihoodFixedRoot function

<dl><dt>Xdesign</dt>
<dd>the design matrix</dd></dl>

Arguments

Minus Likelihood function for a Cauchy model — minusLikelihoodFixedRoot

<dl>

<dt>Xdesign</dt>
<dd>the design matrix</dd>

</dl>

minusLikelihoodFixedRoot: Minus Likelihood function for a Cauchy model

Description

Usage

Value

Arguments