simulateTipsCauchy

Simulate tip values with a Cauchy process

internal

The Cauchy Process can model pulsed continuous trait evolution
on phylogenies. The likelihood is tractable, and is used for parameter
inference and ancestral trait reconstruction.
See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.

Paul Bastide

cauphy

Trait Evolution on Phylogenies Using the Cauchy Process

Gilles Didier

simulateTipsCauchy function

<dl><dt>tree</dt>
<dd>a phylogeny in <code>ape</code> <code>phylo</code> format.</dd>
<dt>root.value</dt>
<dd>the initial root trait value.</dd>
<dt>disp</dt>
<dd>the dispersion parameter of the Cauchy process.</dd></dl>

Arguments

Simulate using the Cauchy Process — simulateTipsCauchy

<dl>

<dt>tree</dt>
<dd>a phylogeny in <code>ape</code> <code>phylo</code> format.</dd>


<dt>root.value</dt>
<dd>the initial root trait value.</dd>


<dt>disp</dt>
<dd>the dispersion parameter of the Cauchy process.</dd>

</dl>

simulateTipsCauchy: Simulate using the Cauchy Process

Description

Usage

Value

Arguments