cbioportalR (version 1.1.0)

get_fusions_by_study: Get Fusions By Study

Description

Get Fusions By Study

Usage

get_fusions_by_study(
  study_id = NULL,
  molecular_profile_id = NULL,
  base_url = NULL
)
get_structural_variants_by_study(
  study_id = NULL,
  molecular_profile_id = NULL,
  base_url = NULL
)

Value

A dataframe of fusions

Arguments

study_id

A study ID to query mutations. If NULL, guesses study ID based on molecular_profile_id.

molecular_profile_id

a molecular profile to query mutations. If NULL, guesses molecular_profile_id based on study ID.

base_url

The database URL to query If NULL will default to URL set with set_cbioportal_db(<your_db>)

Examples

if (FALSE) {
# These return the same results
get_fusions_by_study(molecular_profile_id = "prad_msk_2019_structural_variants")

get_structural_variants_by_study(molecular_profile_id =
       "prad_msk_2019_structural_variants")
       }