get_gene_panel

Retrieve Genes Included For a Specified Panel ID

Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly
functions that wrap 'cBioPortal's' existing API endpoints <https://www.cbioportal.org/api/swagger-ui/index.html>. Users can browse and query genomic data on mutations,
copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'),
microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study).
See <https://www.cbioportal.org/> and Gao et al., (2013) <doi:10.1126/scisignal.2004088> for more information on the cBioPortal web resource.

Karissa Whiting

cbioportalR

Browse and Query Clinical and Genomic Data from cBioPortal

get_gene_panel function

<dl><dt>panel_id</dt>
<dd>name of panel. See <code>available_gene_panels()</code> to get panel ID</dd>
<dt>base_url</dt>
<dd>The database URL to query.
If <code>NULL</code> will default to URL set with <code>set_cbioportal_db(&lt;your_db&gt;)</code></dd></dl>

Arguments

Retrieve Genes Included For a Specified Panel ID — get_gene_panel

<dl>

<dt>panel_id</dt>
<dd>name of panel. See <code>available_gene_panels()</code> to get panel ID</dd>


<dt>base_url</dt>
<dd>The database URL to query.
If <code>NULL</code> will default to URL set with <code>set_cbioportal_db(&lt;your_db&gt;)</code></dd>

</dl>

get_gene_panel: Retrieve Genes Included For a Specified Panel ID

Description

Usage

Value

Arguments

Examples