set_cbioportal_db

This function sets a base cBioPortal URL

Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly
functions that wrap 'cBioPortal's' existing API endpoints <https://www.cbioportal.org/api/swagger-ui/index.html>. Users can browse and query genomic data on mutations,
copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'),
microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study).
See <https://www.cbioportal.org/> and Gao et al., (2013) <doi:10.1126/scisignal.2004088> for more information on the cBioPortal web resource.

Karissa Whiting

cbioportalR

Browse and Query Clinical and Genomic Data from cBioPortal

set_cbioportal_db function

<dl><dt>db</dt>
<dd>The database URL to use as base URL for calls, or "public" for https://www.cbioportal.org/</dd></dl>

Arguments

Karissa Whiting, Daniel D. Sjoberg

Author

Connect to cBioPortal DB — set_cbioportal_db

<dl>

<dt>db</dt>
<dd>The database URL to use as base URL for calls, or "public" for https://www.cbioportal.org/</dd>

</dl>

set_cbioportal_db: Connect to cBioPortal DB

Description

Usage

Value

Arguments

Author

Examples