mouse_cell_cycle_genes

This data set contains Mus Musculus genes which are annotated to the cell-cycle.
 These genes were retrieved from biomart and are intended for use with the 
 "gene_indexer" function. The data set contains the gene names in three different 
 formats, Ensemble Gene IDs (1433 values), MGI symbols (1422 values),
 Entrez Gene IDs (1435 values) and Unigene IDs (1102 values).

datasets

MMcc_genes

Implements a method for identifying and removing
the cell-cycle effect from scRNA-Seq data. The description of the
method is in Barron M. and Li J. (2016) <doi:10.1038/srep33892>. Identifying and removing
the cell-cycle effect from single-cell RNA-Sequencing data. Submitted.
Different from previous methods, ccRemover implements a mechanism that
formally tests whether a component is cell-cycle related or not, and thus
while it often thoroughly removes the cell-cycle effect, it preserves
other features/signals of interest in the data.

Jun Li

ccRemover

Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
Data

Martin Barron

MMcc_genes function

A data set that contains with the following attributes<dl class="dl-horizontal">
 <dt><code>mouse_cell_cycle_genes</code></dt><dd>A data frame with four columns corresponding 
 to each of the different ID formats.</dd>
 </dl>

Format

Mus Musculus genes which are annotated to the cell-cycle — MMcc_genes

A data set that contains with the following attributes<dl class='dl-horizontal'>
 <dt><code>mouse_cell_cycle_genes</code></dt><dd>A data frame with four columns corresponding 
 to each of the different ID formats.</dd>
 </dl>

MMcc_genes: Mus Musculus genes which are annotated to the cell-cycle

Description

Usage

Arguments

Value

Format