celda (version 0.0.0.9000)

renderInteractiveKLPlot: Render an interactive figure demonstrating the clustering performance of different K/L parameters

Description

Plot the performance of a list of celda_CG models returned from running the celda function. This is visualized by rendering a boxplot for each chain run for each combination of K/L (cell/gene).

Usage

renderInteractiveKLPlot(celda.list, method = "perplexity",
  title = "Model Performance (All Chains)")

Arguments

celda.list

A list of celda_CG objects returned from celda function

method

One of "perplexity" or "loglik", passed through to calculatePerformanceMetric()

title

The plot title