celda (version 0.0.0.9000)

simulateCells.celda_G: Simulate cells from the gene clustering generative model

Description

Generate a simulated count matrix, based off a generative distribution whose parameters can be provided by the user.

Usage

# S3 method for celda_G
simulateCells(model, C = 100, N.Range = c(500, 5000),
  G = 1000, L = 5, beta = 1, gamma = 1, delta = 1, seed = 12345,
  ...)

Arguments

model

Dummy parameter for S3 dispatch

C

The number of cells

N.Range

Vector of length 2 given the range (min,max) of number of counts for each cell to be randomly generated from the uniform distribution

G

The number of genes for which to simulate counts

L

The number of transcriptional states

beta

The Dirichlet distribution parameter for Phi; adds a pseudocount to each transcriptional state within each cell

gamma

The Dirichlet distribution parameter for Psi; adds a pseudocount to each gene within each transcriptional state.

delta

The Dirichlet distribution parameter for Psi; adds a pseudocount to each gene within each transcriptional state

seed

Parameter to set.seed() for random number generation

...

Unused arguments