collapse_group

Experimental function for collapsing groups in a cellMarkers objects.

Deconvolution of bulk RNA-Sequencing data into proportions of cells based on a reference single-cell RNA-Sequencing dataset using high-dimensional geometric methodology.

Myles Lewis

cellGeometry

Geometric Single Cell Deconvolution

Rachel Lau

collapse_group function

<dl><dt>mk</dt>
<dd>A 'cellMarkers' class object.</dd>
<dt>groups</dt>
<dd>Character vector of groups to be collapsed. The collapsed group
retains the name of the 1st element.</dd>
<dt>weights</dt>
<dd>Optional vector of weights for calculating the mean gene
expression across groups. If left as <code>NULL</code> weights are determined by the
total cell count in each group.</dd></dl>

Arguments

Collapse groups in cellMarkers object — collapse_group

<dl>

<dt>mk</dt>
<dd>A 'cellMarkers' class object.</dd>


<dt>groups</dt>
<dd>Character vector of groups to be collapsed. The collapsed group
retains the name of the 1st element.</dd>


<dt>weights</dt>
<dd>Optional vector of weights for calculating the mean gene
expression across groups. If left as <code>NULL</code> weights are determined by the
total cell count in each group.</dd>

</dl>

collapse_group: Collapse groups in cellMarkers object

Description

Usage

Value

Arguments